PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G209900.1
Common NameB456_008G209900, LOC105764830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 338aa    MW: 37351.9 Da    PI: 7.7234
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G209900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH277.9e-09167214455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                         +h+++Er RR++i +++  L+ l+P +     +K   Ka +L + ++Y++sLq
  Gorai.008G209900.1 167 SHSIAERVRRKKISERMKILQCLVPGC-----EKvTGKALMLDEIINYVQSLQ 214
                         8*************************9.....67699***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-16161229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-9161218No hitNo description
Gene3DG3DSA:4.10.280.102.9E-15163226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.824163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-7169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAAFSYILDP NIFLQNMAPT PKASSFMMDD GNLTSNCFSQ YYSPELFHDS LFDPNNHETS  60
CVDHCSKVVS QSDNEPSVGE KQSTGGGDST VVDKLEKGEQ VTQNVNPRNR KRKTRNGTTF  120
KTKDAKEGKA KEKKKCNNGK KGEKKSPEEP PSGYIHVRAR RGQATDSHSI AERVRRKKIS  180
ERMKILQCLV PGCEKVTGKA LMLDEIINYV QSLQNQVEFL SMKLASVSPM FYDFGVDLEA  240
LILVKPERVN SEASTTTPVL PCLQQCNPTQ ASAFVDSTTA TFAPSNNYPF LGASHQGQTP  300
ILFSHPQDNG SVLWDVEDQR QKSLNSSGLN DNLCSFH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.33586e-81seedling
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5908641e-125JX590864.1 Gossypium hirsutum clone NBRI_GE25866 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439056.10.0PREDICTED: transcription factor bHLH137-like
TrEMBLA0A0D2PYS30.0A0A0D2PYS3_G
STRINGPOPTR_0012s10670.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-51bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]